STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111587076Uncharacterized protein. (409 aa)    
Predicted Functional Partners:
LOC111563410
Fibrinogen alpha chain.
   
 0.825
fgg
Fibrinogen gamma chain.
   
 0.721
hgd
Homogentisate 1,2-dioxygenase.
   
  
 0.689
fgb
Fibrinogen beta chain.
   
 0.678
LOC111587894
Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
    0.526
agxt2
Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
    0.526
LOC111569721
SERPIN domain-containing protein; Belongs to the serpin family.
   
 
 0.522
LOC111568029
SERPIN domain-containing protein; Belongs to the serpin family.
   
 
 0.522
f13a1
Coagulation factor XIII, A1 polypeptide b.
    
 0.453
LOC111569605
Transglutaminase 1 like 2.
    
 0.453
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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