Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
vti1aVesicle transport through interaction with t-SNAREs 1A. (217 aa)    
Predicted Functional Partners:
vamp4
Vesicle-associated membrane protein 4.
   
 0.999
stx16
Syntaxin 16; Belongs to the syntaxin family.
   
 0.999
VAMP3
Vesicle associated membrane protein 3.
   
 0.998
stx8
Syntaxin 8.
   
 0.997
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
0.994
stx6
Syntaxin 6; Belongs to the syntaxin family.
   
 0.993
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.991
LOC111567832
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
 0.990
napg
N-ethylmaleimide-sensitive factor attachment protein, gamma b.
   
 0.989
stx7
Syntaxin 7-like; Belongs to the syntaxin family.
   
 0.986
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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