Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111585224Mcf.2 cell line derived transforming sequence-like a. (1103 aa)    
Predicted Functional Partners:
CDC42
Cell division cycle 42.
    
 0.746
LOC111573839
Uncharacterized protein.
    
 0.746
LOC111585700
Cell division cycle 42, like.
    
 0.589
LOC111571073
Cell division control protein 42 homolog.
    
 0.589
LOC111571068
Uncharacterized protein.
    
 0.589
LOC111566807
Ras homolog family member Gb.
    
 0.551
ENSAOCP00000017504
Ras homolog gene family, member Gd.
    
 0.551
LOC111580690
Uncharacterized protein.
    
 0.539
LOC111587485
Uncharacterized protein.
    
 0.539
LOC111568127
Uncharacterized protein.
    
 0.539
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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