foxa2 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

foxa2

Forkhead box A2. (415 aa)

Predicted Functional Partners:

gata6

0.634

pgr

0.634

gata4

0.632

nrip1

0.629

gata3

0.612

LOC111588783

0.612

GATA2

0.612

gata5

0.591

LOC111573967

0.578

LOC111570317

0.569

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GATA2	LOC111570317	ENSAOCP00000022989	ENSAOCP00000014681	GATA binding protein 2.	E1A binding protein p300 b.	0.636
GATA2	LOC111573967	ENSAOCP00000022989	ENSAOCP00000029920	GATA binding protein 2.	GATA binding protein 1a.	0.464
GATA2	foxa2	ENSAOCP00000022989	ENSAOCP00000001228	GATA binding protein 2.	Forkhead box A2.	0.612
GATA2	gata4	ENSAOCP00000022989	ENSAOCP00000027206	GATA binding protein 2.	GATA binding protein 4.	0.400
GATA2	gata6	ENSAOCP00000022989	ENSAOCP00000021345	GATA binding protein 2.	GATA binding protein 6.	0.400
GATA2	nrip1	ENSAOCP00000022989	ENSAOCP00000001947	GATA binding protein 2.	Nuclear receptor interacting protein 1b.	0.619
GATA2	pgr	ENSAOCP00000022989	ENSAOCP00000022320	GATA binding protein 2.	Progesterone receptor.	0.588
LOC111570317	GATA2	ENSAOCP00000014681	ENSAOCP00000022989	E1A binding protein p300 b.	GATA binding protein 2.	0.636
LOC111570317	LOC111573967	ENSAOCP00000014681	ENSAOCP00000029920	E1A binding protein p300 b.	GATA binding protein 1a.	0.763
LOC111570317	LOC111588783	ENSAOCP00000014681	ENSAOCP00000021171	E1A binding protein p300 b.	GATA binding protein 2a.	0.636
LOC111570317	foxa2	ENSAOCP00000014681	ENSAOCP00000001228	E1A binding protein p300 b.	Forkhead box A2.	0.569
LOC111570317	gata3	ENSAOCP00000014681	ENSAOCP00000012882	E1A binding protein p300 b.	GATA binding protein 3.	0.636
LOC111570317	gata4	ENSAOCP00000014681	ENSAOCP00000027206	E1A binding protein p300 b.	GATA binding protein 4.	0.587
LOC111570317	gata5	ENSAOCP00000014681	ENSAOCP00000030467	E1A binding protein p300 b.	GATA binding protein 5.	0.513
LOC111570317	gata6	ENSAOCP00000014681	ENSAOCP00000021345	E1A binding protein p300 b.	GATA binding protein 6.	0.587
LOC111570317	nrip1	ENSAOCP00000014681	ENSAOCP00000001947	E1A binding protein p300 b.	Nuclear receptor interacting protein 1b.	0.641
LOC111570317	pgr	ENSAOCP00000014681	ENSAOCP00000022320	E1A binding protein p300 b.	Progesterone receptor.	0.638
LOC111573967	GATA2	ENSAOCP00000029920	ENSAOCP00000022989	GATA binding protein 1a.	GATA binding protein 2.	0.464
LOC111573967	LOC111570317	ENSAOCP00000029920	ENSAOCP00000014681	GATA binding protein 1a.	E1A binding protein p300 b.	0.763
LOC111573967	LOC111588783	ENSAOCP00000029920	ENSAOCP00000021171	GATA binding protein 1a.	GATA binding protein 2a.	0.470