STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm7RNA binding motif protein 7. (260 aa)    
Predicted Functional Partners:
zcchc8
Zinc finger, CCHC domain containing 8.
    
 
 0.986
mtrex
Mtr4 exosome RNA helicase.
    
 0.966
exosc8
Exosome component 8.
    
 
 0.894
exosc3
Exosome component 3.
    
 
 0.859
sf3b2
Splicing factor 3b, subunit 2.
    
 0.831
exosc7
Exosome component 7.
    
 
 0.770
LOC111567087
Uncharacterized protein.
    
 0.705
srrt
Serrate RNA effector molecule homolog (Arabidopsis).
    
 0.705
exosc1
Exosome component 1.
    
 
 0.699
exosc10
Exosome component 10.
    
 
 0.692
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.