Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hoxd12Homeobox D12a. (262 aa)    
Predicted Functional Partners:
hand2
Heart and neural crest derivatives expressed 2.
    
 
 0.494
sall3
Spalt-like transcription factor 3a.
    
 
 0.450
sall1
Spalt-like transcription factor 1a.
    
 
 0.450
sall4
Spalt-like transcription factor 4.
    
 
 0.450
LOC111575242
Spalt-like transcription factor 3b.
    
 
 0.450
ENSAOCP00000010873
ZP domain-containing protein.
      
 0.448
evx2
Even-skipped homeobox 2.
   
 
 0.434
bglap
Gla domain-containing protein.
      
 0.426
LOC111583661
Uncharacterized protein.
      
 0.421
LOC111586187
Alpha-1-microglobulin/bikunin precursor.
      
 0.401
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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