STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSAOCP00000001267Uncharacterized protein. (203 aa)    
Predicted Functional Partners:
gramd1b
GRAM domain containing 1Bb.
 
      0.787
gramd1a
GRAM domain containing 1A.
 
  
   0.592
gramd1c
GRAM domain containing 1c.
 
  
   0.464
ENSAOCP00000004343
Sodium channel, voltage-gated, type II, beta.
    
 0.445
LOC111574542
Ig-like domain-containing protein.
    
 0.445
LOC111579866
Myelin protein zero-like 2b.
    
 0.445
LOC111576734
H6 family homeobox 4.
      
 0.418
carnmt1
Carnosine N-methyltransferase 1.
      
 0.414
tbrg1
Transforming growth factor beta regulator 1.
      
 0.414
garnl3
GTPase activating Rap/RanGAP domain like 3.
      
 0.414
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.