Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plekhb2Pleckstrin homology domain containing, family B (evectins) member 2. (222 aa)    
Predicted Functional Partners:
chga
Chromogranin A.
   
    0.890
LOC111563655
Si:dkey-191g9.5.
    
   0.500
RAP1GDS1
Rap1 GTPase-GDP dissociation stimulator 1.
    
   0.500
bola1
BolA family member 1; Belongs to the BolA/IbaG family.
      
 0.439
WDR25
WD repeat domain 25.
      
 0.401
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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