STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nischNischarin. (1452 aa)    
Predicted Functional Partners:
LOC111586038
Erythropoietin receptor.
      
 0.588
LOC111585248
Stathmin; Belongs to the stathmin family.
      
 0.578
LOC111567299
Rho family GTPase 2.
    
  0.553
LOC111567376
Rho family GTPase 2.
    
  0.553
LOC111575506
Polybromo 1.
      
 0.506
brca2
BRCA2 DNA repair associated.
      
 0.497
RAC1
Rac family small GTPase 1.
    
 0.487
LOC111577589
Rac family small GTPase 2.
    
 0.487
rac3
Rac family small GTPase 3b.
    
 0.487
LOC111576185
Uncharacterized protein.
    
 0.487
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.