Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111569595Uncharacterized protein; Belongs to the AAA ATPase family. (435 aa)    
Predicted Functional Partners:
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.995
LOC111569344
Charged multivesicular body protein 5b.
   
 0.985
chmp5
Charged multivesicular body protein 5a.
   
 0.985
chmp1b
Chromatin modifying protein 1B.
   
 0.981
LOC111569860
Uncharacterized protein.
   
 0.981
ist1
IST1 factor associated with ESCRT-III.
   
 0.954
chmp2a
Charged multivesicular body protein 2A.
    
 0.941
chmp3
Charged multivesicular body protein 3.
   
 0.937
chmp2b
Charged multivesicular body protein 2Bb.
   
 0.921
MLKL
Mixed lineage kinase domain like pseudokinase.
    
  0.903
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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