STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111569595Uncharacterized protein; Belongs to the AAA ATPase family. (435 aa)    
Predicted Functional Partners:
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.995
chmp1b
Chromatin modifying protein 1B.
   
 0.985
LOC111569860
Uncharacterized protein.
   
 0.985
LOC111569344
Charged multivesicular body protein 5b.
   
 0.975
chmp5
Charged multivesicular body protein 5a.
   
 0.975
chmp2a
Charged multivesicular body protein 2A.
    
 0.958
ist1
IST1 factor associated with ESCRT-III.
   
 0.952
LOC111569553
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
  
  
 
0.937
LOC111579569
Charged multivesicular body protein 6.
    
 0.908
LOC111564660
Charged multivesicular body protein 6a.
    
 0.908
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.