STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vac14Vac14 homolog (S. cerevisiae). (790 aa)    
Predicted Functional Partners:
FIG4
FIG4 phosphoinositide 5-phosphatase.
   
 0.988
ENSAOCP00000023468
SAC domain-containing protein.
   
 0.988
ENSAOCP00000007475
PIPK domain-containing protein.
    
 0.987
ENSAOCP00000017643
Uncharacterized protein.
    
 0.987
stk40
Serine/threonine kinase 40.
   
 
 0.908
dipk2a
Divergent protein kinase domain 2Ab.
   
 0.886
ENSAOCP00000010626
Uncharacterized protein.
   
 0.886
WIPI1
WD repeat domain, phosphoinositide interacting 1.
    
 
 0.817
LOC111569213
WD repeat domain, phosphoinositide interacting 1.
    
 
 0.817
wipi2
WD repeat domain, phosphoinositide interacting 2.
    
 
 0.817
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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