tmem104 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tmem104

Transmembrane protein 104. (492 aa)

Predicted Functional Partners:

wdr54

0.691

wdr53

0.686

LOC111587460

0.624

ENSAOCP00000026994

0.624

rpl38

0.617

antkmt

0.616

unc93a

0.615

supv3l1

0.555

svopl

0.551

mier3

0.548

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAOCP00000026994	rpl38	ENSAOCP00000026994	ENSAOCP00000017974	N-acetyltransferase domain-containing protein.	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.428
ENSAOCP00000026994	svopl	ENSAOCP00000026994	ENSAOCP00000031549	N-acetyltransferase domain-containing protein.	SVOP-like.	0.533
ENSAOCP00000026994	tmem104	ENSAOCP00000026994	ENSAOCP00000001340	N-acetyltransferase domain-containing protein.	Transmembrane protein 104.	0.624
ENSAOCP00000026994	wdr53	ENSAOCP00000026994	ENSAOCP00000012737	N-acetyltransferase domain-containing protein.	WD repeat domain 53.	0.526
ENSAOCP00000026994	wdr54	ENSAOCP00000026994	ENSAOCP00000006749	N-acetyltransferase domain-containing protein.	WD repeat domain 54.	0.505
LOC111587460	rpl38	ENSAOCP00000024983	ENSAOCP00000017974	N-acetyltransferase 9 (GCN5-related, putative).	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.428
LOC111587460	svopl	ENSAOCP00000024983	ENSAOCP00000031549	N-acetyltransferase 9 (GCN5-related, putative).	SVOP-like.	0.533
LOC111587460	tmem104	ENSAOCP00000024983	ENSAOCP00000001340	N-acetyltransferase 9 (GCN5-related, putative).	Transmembrane protein 104.	0.624
LOC111587460	wdr53	ENSAOCP00000024983	ENSAOCP00000012737	N-acetyltransferase 9 (GCN5-related, putative).	WD repeat domain 53.	0.526
LOC111587460	wdr54	ENSAOCP00000024983	ENSAOCP00000006749	N-acetyltransferase 9 (GCN5-related, putative).	WD repeat domain 54.	0.505
antkmt	supv3l1	ENSAOCP00000013864	ENSAOCP00000031308	Family with sequence similarity 173 member A.	SUV3-like helicase.	0.622
antkmt	tmem104	ENSAOCP00000013864	ENSAOCP00000001340	Family with sequence similarity 173 member A.	Transmembrane protein 104.	0.616
mier3	tmem104	ENSAOCP00000008918	ENSAOCP00000001340	Mesoderm induction early response 1, family member 3 b.	Transmembrane protein 104.	0.548
rpl38	ENSAOCP00000026994	ENSAOCP00000017974	ENSAOCP00000026994	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	N-acetyltransferase domain-containing protein.	0.428
rpl38	LOC111587460	ENSAOCP00000017974	ENSAOCP00000024983	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	N-acetyltransferase 9 (GCN5-related, putative).	0.428
rpl38	tmem104	ENSAOCP00000017974	ENSAOCP00000001340	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	Transmembrane protein 104.	0.617
supv3l1	antkmt	ENSAOCP00000031308	ENSAOCP00000013864	SUV3-like helicase.	Family with sequence similarity 173 member A.	0.622
supv3l1	tmem104	ENSAOCP00000031308	ENSAOCP00000001340	SUV3-like helicase.	Transmembrane protein 104.	0.555
svopl	ENSAOCP00000026994	ENSAOCP00000031549	ENSAOCP00000026994	SVOP-like.	N-acetyltransferase domain-containing protein.	0.533
svopl	LOC111587460	ENSAOCP00000031549	ENSAOCP00000024983	SVOP-like.	N-acetyltransferase 9 (GCN5-related, putative).	0.533