STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111573686Collagen beta(1-O)galactosyltransferase 1. (606 aa)    
Predicted Functional Partners:
plod3
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
   
0.948
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
   
0.948
LOC111574437
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
   
0.948
LOC111571306
Collagen, type VI, alpha 2.
   
 0.439
ENSAOCP00000009972
Uncharacterized protein.
   
 0.439
ogfod2
2-oxoglutarate and iron-dependent oxygenase domain containing 2.
   
 0.401
LOC111580437
2-oxoglutarate and iron-dependent oxygenase domain containing 2.
   
 0.401
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.