STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111573686Collagen beta(1-O)galactosyltransferase 1. (606 aa)    
Predicted Functional Partners:
plod3
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
   
0.949
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
   
0.949
LOC111574437
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
   
0.949
LOC111571306
Collagen, type VI, alpha 2.
   
 0.639
ENSAOCP00000009972
Uncharacterized protein.
   
 0.639
ENSAOCP00000023848
Matrix metallopeptidase 30.
    
 
 0.624
ENSAOCP00000028737
ZnMc domain-containing protein.
    
 
 0.624
ENSAOCP00000015090
Wu:fc38h03.
    
  0.589
MMP1
Matrix metallopeptidase 1.
    
 
 0.544
LOC111583610
ZnMc domain-containing protein.
    
 
 0.544
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.