STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc27Tetratricopeptide repeat domain 27. (845 aa)    
Predicted Functional Partners:
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 
 0.946
aar2
AAR2 splicing factor.
    
 
 0.915
LOC111568144
PWP2 small subunit processome component.
   
    0.887
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 
 0.881
ncdn
Neurochondrin.
    
 
 0.869
suox
Sulfite oxidase.
    
   0.861
wdr36
WD repeat domain 36.
   
    0.861
wdr3
WD repeat domain 3.
   
  
 0.848
ecd
Ecdysoneless homolog (Drosophila).
    
   0.843
prpf8
Pre-mRNA processing factor 8.
    
 
 0.840
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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