Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111580738Heme-binding protein soul5. (219 aa)    
Predicted Functional Partners:
pdcd6
Programmed cell death 6.
    
   0.691
pef1
Penta-EF-hand domain containing 1.
    
   0.691
lrpprc
Leucine-rich pentatricopeptide repeat containing.
    
 
 0.587
LOC111567816
CECR2 histone acetyl-lysine reader.
      
 0.522
uxt
Ubiquitously-expressed, prefoldin-like chaperone.
      
 0.495
id3
Inhibitor of DNA binding 3.
   
    0.448
cdh24
Cadherin 24, type 2b; Cadherins are calcium-dependent cell adhesion proteins.
      
 0.409
trim45
Tripartite motif containing 45.
      
 0.402
LOC111565753
Si:dkeyp-86f7.4.
      
 0.401
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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