STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111580738Heme-binding protein soul5. (219 aa)    
Predicted Functional Partners:
LOC111573969
BH4_2 domain-containing protein.
   
 
 0.571
bcl2l1
BCL2 like 1.
   
 
 0.571
pdcd6
Programmed cell death 6.
    
   0.563
pef1
Penta-EF-hand domain containing 1.
    
   0.563
LOC111567816
CECR2 histone acetyl-lysine reader.
      
 0.448
lrpprc
Leucine-rich pentatricopeptide repeat containing.
    
 
 0.440
uxt
Ubiquitously-expressed, prefoldin-like chaperone.
      
 0.420
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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