Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vldlrVery low density lipoprotein receptor. (863 aa)    
Predicted Functional Partners:
RELN
Reelin.
    
 0.945
pcsk9
Proprotein convertase subtilisin/kexin type 9.
    
 0.883
mylip
Myosin regulatory light chain interacting protein a.
    
 0.838
dab1
DAB adaptor protein 1a.
    
 0.829
LOC111587142
DAB adaptor protein 1b.
    
 0.819
LOC111562605
Uncharacterized protein.
    
 0.813
ldlrap1
Low density lipoprotein receptor adaptor protein 1b.
    
 0.799
apob
Apolipoprotein Ba.
    
 0.781
LOC111566432
Vitellogenin domain-containing protein.
    
 0.781
dab2
DAB adaptor protein 2.
    
 0.771
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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