Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC111563162LisH domain-containing protein. (1513 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
   
 
 0.963
samhd1
SAM domain and HD domain 1.
    
 
 0.950
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.926
DDA1
DET1 and DDB1 associated 1.
    
 0.913
dda1
DET1 and DDB1 associated 1.
    
 0.913
cul4b
Cullin 4B; Belongs to the cullin family.
   
 0.899
cul4a
Cullin 4A; Belongs to the cullin family.
   
 0.899
cops5
COP9 signalosome subunit 5.
    
 
 0.888
COPS6
COP9 signalosome subunit 6.
    
 
 0.881
cops3
COP9 signalosome subunit 3.
    
 
 0.861
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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