STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111584624Leucine rich repeat containing 4Bb. (745 aa)    
Predicted Functional Partners:
ENSAOCP00000015835
Protein tyrosine phosphatase receptor type Fb.
    
 0.950
ptprf
Protein tyrosine phosphatase receptor type Fa.
    
 0.950
lrrc4b
Leucine rich repeat containing 4Ba.
  
  
 
0.901
LOC111575489
Uncharacterized protein.
    
 0.536
ENSAOCP00000030015
Uncharacterized protein.
    
 0.536
LOC111579721
Vav 3 guanine nucleotide exchange factor b.
   
 0.527
ntng1
Netrin g1a.
   
 0.527
LOC111564082
Netrin G2.
   
 
 0.464
LOC111581606
Uncharacterized protein.
   
 
 0.464
naa25
N(alpha)-acetyltransferase 25, NatB auxiliary subunit.
    
 
 0.440
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.