Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC111578328Zinc finger, matrin-type 4b. (260 aa)    
Predicted Functional Partners:
tm2d2
TM2 domain containing 2.
      
 0.614
brf2
BRF2 RNA polymerase III transcription initiation factor subunit.
   
  
 0.518
LOC111565826
DENN/MADD domain containing 5B.
   
  
 0.516
dennd5a
DENN/MADD domain containing 5A.
   
  
 0.516
prkra
Protein kinase, interferon-inducible double stranded RNA dependent activator.
    
 
 0.495
tarbp2
RISC-loading complex subunit TARBP2; Required for formation of the RNA induced silencing complex (RISC). Component of the RISC loading complex (RLC), also known as the micro-RNA (miRNA) loading complex (miRLC), which is composed of DICER1, AGO2 and TARBP2. Within the RLC/miRLC, DICER1 and TARBP2 are required to process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load them onto AGO2. AGO2 bound to the mature miRNA constitutes the minimal RISC and may subsequently dissociate from DICER1 and TARBP2. May also play a role in the production of short interfering RNAs (siRNAs) from [...]
    
 
 0.495
leng9
C3H1-type domain-containing protein.
      
 0.493
itfg1
Integrin alpha FG-GAP repeat containing 1.
      
 0.488
plekha2
Si:ch211-204d2.4.
      
 0.452
LOC111571132
Copine VII.
   
  
 0.427
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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