STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111562660Uncharacterized protein. (474 aa)    
Predicted Functional Partners:
LOC111564459
BPI fold containing family C, like.
  
 
 
0.922
LOC111588528
Uncharacterized protein.
   
 0.586
LOC111588527
Uncharacterized protein.
   
 0.586
LOC111574547
Uncharacterized protein.
   
 0.559
sys1
Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.
     
 0.522
apof
Apolipoprotein F.
     
 0.505
LOC111585760
C-C motif chemokine.
   
  
 0.451
arl13b
ADP-ribosylation factor-like 13b.
     
 0.420
LOC111570806
ADP-ribosylation factor-like 13A.
     
 0.420
arfrp1
ADP-ribosylation factor related protein 1.
     
 0.420
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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