Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111584641Uncharacterized protein. (81 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.887
LOC111564110
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
   
  0.807
vcl
Vinculin b.
   
 0.785
LOC111581406
Vinculin a.
   
 0.785
LOC111582920
Uncharacterized protein.
   
 0.779
LOC111566303
Junction plakoglobin a.
   
 0.779
ARVCF
ARVCF delta catenin family member b.
   
 0.774
afdn
Afadin, adherens junction formation factor a.
   
 
 0.766
LOC111573771
Uncharacterized protein.
   
 0.760
LOC111567506
Catenin (cadherin-associated protein), delta 1.
   
 0.751
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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