ercc6l2 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ercc6l2

Excision repair cross-complementation group 6-like 2. (1095 aa)

Predicted Functional Partners:

pcna

0.929

fancm

0.800

ENSAOCP00000002808

0.800

actl6a

0.798

ruvbl1

0.789

rad18

0.784

ino80c

0.760

exo1

0.740

ruvbl2

0.705

paxx

0.698

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAOCP00000002808	ercc6l2	ENSAOCP00000002808	ENSAOCP00000001437	Helicase ATP-binding domain-containing protein.	Excision repair cross-complementation group 6-like 2.	0.800
ENSAOCP00000002808	exo1	ENSAOCP00000002808	ENSAOCP00000001498	Helicase ATP-binding domain-containing protein.	Exonuclease 1.	0.786
ENSAOCP00000002808	fancm	ENSAOCP00000002808	ENSAOCP00000002769	Helicase ATP-binding domain-containing protein.	Helicase C-terminal domain-containing protein.	0.987
ENSAOCP00000002808	pcna	ENSAOCP00000002808	ENSAOCP00000002571	Helicase ATP-binding domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.969
ENSAOCP00000002808	rad18	ENSAOCP00000002808	ENSAOCP00000020406	Helicase ATP-binding domain-containing protein.	RAD18 E3 ubiquitin protein ligase.	0.951
actl6a	ercc6l2	ENSAOCP00000004927	ENSAOCP00000001437	Actin-like 6A; Belongs to the actin family.	Excision repair cross-complementation group 6-like 2.	0.798
actl6a	ino80c	ENSAOCP00000004927	ENSAOCP00000020060	Actin-like 6A; Belongs to the actin family.	INO80 complex subunit C.	0.988
actl6a	pcna	ENSAOCP00000004927	ENSAOCP00000002571	Actin-like 6A; Belongs to the actin family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.530
actl6a	ruvbl1	ENSAOCP00000004927	ENSAOCP00000022842	Actin-like 6A; Belongs to the actin family.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.995
actl6a	ruvbl2	ENSAOCP00000004927	ENSAOCP00000020747	Actin-like 6A; Belongs to the actin family.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.984
ercc6l2	ENSAOCP00000002808	ENSAOCP00000001437	ENSAOCP00000002808	Excision repair cross-complementation group 6-like 2.	Helicase ATP-binding domain-containing protein.	0.800
ercc6l2	actl6a	ENSAOCP00000001437	ENSAOCP00000004927	Excision repair cross-complementation group 6-like 2.	Actin-like 6A; Belongs to the actin family.	0.798
ercc6l2	exo1	ENSAOCP00000001437	ENSAOCP00000001498	Excision repair cross-complementation group 6-like 2.	Exonuclease 1.	0.740
ercc6l2	fancm	ENSAOCP00000001437	ENSAOCP00000002769	Excision repair cross-complementation group 6-like 2.	Helicase C-terminal domain-containing protein.	0.800
ercc6l2	ino80c	ENSAOCP00000001437	ENSAOCP00000020060	Excision repair cross-complementation group 6-like 2.	INO80 complex subunit C.	0.760
ercc6l2	paxx	ENSAOCP00000001437	ENSAOCP00000031150	Excision repair cross-complementation group 6-like 2.	PAXX non-homologous end joining factor.	0.698
ercc6l2	pcna	ENSAOCP00000001437	ENSAOCP00000002571	Excision repair cross-complementation group 6-like 2.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.929
ercc6l2	rad18	ENSAOCP00000001437	ENSAOCP00000020406	Excision repair cross-complementation group 6-like 2.	RAD18 E3 ubiquitin protein ligase.	0.784
ercc6l2	ruvbl1	ENSAOCP00000001437	ENSAOCP00000022842	Excision repair cross-complementation group 6-like 2.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.789
ercc6l2	ruvbl2	ENSAOCP00000001437	ENSAOCP00000020747	Excision repair cross-complementation group 6-like 2.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.705