RAPGEF5 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

RAPGEF5

Uncharacterized protein. (515 aa)

Predicted Functional Partners:

RIMS2

0.568

ENSAOCP00000012448

0.568

ENSAOCP00000012478

0.568

mras

0.533

ckap5

0.513

LOC111585086

0.477

LOC111572080

0.477

LOC111586839

0.477

rapgefl1

0.474

slc35c1

0.465

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAOCP00000012448	ENSAOCP00000012478	ENSAOCP00000012448	ENSAOCP00000012478	PDZ domain-containing protein.	C2 domain-containing protein.	0.927
ENSAOCP00000012448	RAPGEF5	ENSAOCP00000012448	ENSAOCP00000001440	PDZ domain-containing protein.	Uncharacterized protein.	0.568
ENSAOCP00000012448	RIMS2	ENSAOCP00000012448	ENSAOCP00000007986	PDZ domain-containing protein.	Regulating synaptic membrane exocytosis 2.	0.563
ENSAOCP00000012448	rapgefl1	ENSAOCP00000012448	ENSAOCP00000012289	PDZ domain-containing protein.	Rap guanine nucleotide exchange factor (GEF)-like 1.	0.568
ENSAOCP00000012478	ENSAOCP00000012448	ENSAOCP00000012478	ENSAOCP00000012448	C2 domain-containing protein.	PDZ domain-containing protein.	0.927
ENSAOCP00000012478	RAPGEF5	ENSAOCP00000012478	ENSAOCP00000001440	C2 domain-containing protein.	Uncharacterized protein.	0.568
ENSAOCP00000012478	RIMS2	ENSAOCP00000012478	ENSAOCP00000007986	C2 domain-containing protein.	Regulating synaptic membrane exocytosis 2.	0.563
ENSAOCP00000012478	rapgefl1	ENSAOCP00000012478	ENSAOCP00000012289	C2 domain-containing protein.	Rap guanine nucleotide exchange factor (GEF)-like 1.	0.568
LOC111572080	LOC111585086	ENSAOCP00000016942	ENSAOCP00000003537	RAP1A, member of RAS oncogene family a.	Uncharacterized protein.	0.900
LOC111572080	RAPGEF5	ENSAOCP00000016942	ENSAOCP00000001440	RAP1A, member of RAS oncogene family a.	Uncharacterized protein.	0.477
LOC111585086	LOC111572080	ENSAOCP00000003537	ENSAOCP00000016942	Uncharacterized protein.	RAP1A, member of RAS oncogene family a.	0.900
LOC111585086	RAPGEF5	ENSAOCP00000003537	ENSAOCP00000001440	Uncharacterized protein.	Uncharacterized protein.	0.477
LOC111586839	RAPGEF5	ENSAOCP00000027213	ENSAOCP00000001440	Uncharacterized protein.	Uncharacterized protein.	0.477
RAPGEF5	ENSAOCP00000012448	ENSAOCP00000001440	ENSAOCP00000012448	Uncharacterized protein.	PDZ domain-containing protein.	0.568
RAPGEF5	ENSAOCP00000012478	ENSAOCP00000001440	ENSAOCP00000012478	Uncharacterized protein.	C2 domain-containing protein.	0.568
RAPGEF5	LOC111572080	ENSAOCP00000001440	ENSAOCP00000016942	Uncharacterized protein.	RAP1A, member of RAS oncogene family a.	0.477
RAPGEF5	LOC111585086	ENSAOCP00000001440	ENSAOCP00000003537	Uncharacterized protein.	Uncharacterized protein.	0.477
RAPGEF5	LOC111586839	ENSAOCP00000001440	ENSAOCP00000027213	Uncharacterized protein.	Uncharacterized protein.	0.477
RAPGEF5	RIMS2	ENSAOCP00000001440	ENSAOCP00000007986	Uncharacterized protein.	Regulating synaptic membrane exocytosis 2.	0.568
RAPGEF5	ckap5	ENSAOCP00000001440	ENSAOCP00000004059	Uncharacterized protein.	Cytoskeleton associated protein 5.	0.513