cfap57 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cfap57

Cilia and flagella associated protein 57. (1168 aa)

Predicted Functional Partners:

lrrc23

0.945

ENSAOCP00000002650

0.878

ENSAOCP00000021534

0.878

dnali1

0.826

LOC111583483

0.757

ENSAOCP00000031762

0.757

ccdc39

0.746

efcab1

0.731

maats1

0.728

ttc26

0.715

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAOCP00000002650	ENSAOCP00000031762	ENSAOCP00000002650	ENSAOCP00000031762	Uncharacterized protein.	Uncharacterized protein.	0.649
ENSAOCP00000002650	LOC111583483	ENSAOCP00000002650	ENSAOCP00000010469	Uncharacterized protein.	MYND-type domain-containing protein.	0.649
ENSAOCP00000002650	ccdc39	ENSAOCP00000002650	ENSAOCP00000019171	Uncharacterized protein.	Uncharacterized protein.	0.821
ENSAOCP00000002650	cfap57	ENSAOCP00000002650	ENSAOCP00000001456	Uncharacterized protein.	Cilia and flagella associated protein 57.	0.878
ENSAOCP00000002650	dnali1	ENSAOCP00000002650	ENSAOCP00000010209	Uncharacterized protein.	Dynein, axonemal, light intermediate chain 1.	0.819
ENSAOCP00000002650	efcab1	ENSAOCP00000002650	ENSAOCP00000005072	Uncharacterized protein.	EF-hand calcium binding domain 1.	0.747
ENSAOCP00000002650	lrrc23	ENSAOCP00000002650	ENSAOCP00000017585	Uncharacterized protein.	Leucine rich repeat containing 23.	0.643
ENSAOCP00000002650	maats1	ENSAOCP00000002650	ENSAOCP00000006959	Uncharacterized protein.	MYCBP-associated, testis expressed 1.	0.884
ENSAOCP00000021534	ENSAOCP00000031762	ENSAOCP00000021534	ENSAOCP00000031762	Uncharacterized protein.	Uncharacterized protein.	0.649
ENSAOCP00000021534	LOC111583483	ENSAOCP00000021534	ENSAOCP00000010469	Uncharacterized protein.	MYND-type domain-containing protein.	0.649
ENSAOCP00000021534	ccdc39	ENSAOCP00000021534	ENSAOCP00000019171	Uncharacterized protein.	Uncharacterized protein.	0.821
ENSAOCP00000021534	cfap57	ENSAOCP00000021534	ENSAOCP00000001456	Uncharacterized protein.	Cilia and flagella associated protein 57.	0.878
ENSAOCP00000021534	dnali1	ENSAOCP00000021534	ENSAOCP00000010209	Uncharacterized protein.	Dynein, axonemal, light intermediate chain 1.	0.819
ENSAOCP00000021534	efcab1	ENSAOCP00000021534	ENSAOCP00000005072	Uncharacterized protein.	EF-hand calcium binding domain 1.	0.747
ENSAOCP00000021534	lrrc23	ENSAOCP00000021534	ENSAOCP00000017585	Uncharacterized protein.	Leucine rich repeat containing 23.	0.643
ENSAOCP00000021534	maats1	ENSAOCP00000021534	ENSAOCP00000006959	Uncharacterized protein.	MYCBP-associated, testis expressed 1.	0.884
ENSAOCP00000031762	ENSAOCP00000002650	ENSAOCP00000031762	ENSAOCP00000002650	Uncharacterized protein.	Uncharacterized protein.	0.649
ENSAOCP00000031762	ENSAOCP00000021534	ENSAOCP00000031762	ENSAOCP00000021534	Uncharacterized protein.	Uncharacterized protein.	0.649
ENSAOCP00000031762	ccdc39	ENSAOCP00000031762	ENSAOCP00000019171	Uncharacterized protein.	Uncharacterized protein.	0.675
ENSAOCP00000031762	cfap57	ENSAOCP00000031762	ENSAOCP00000001456	Uncharacterized protein.	Cilia and flagella associated protein 57.	0.757