STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rbp3Interphotoreceptor retinoid-binding protein like. (917 aa)    
Predicted Functional Partners:
LOC111565134
Clusterin; Belongs to the clusterin family.
   
  
 0.728
clul1
Clusterin; Belongs to the clusterin family.
   
  
 0.728
LOC111581525
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
   
  
 0.705
LOC111569204
Opticin.
   
  
 0.505
LOC111575250
Rhodopsin.
   
  
 0.467
LOC111575291
Rhodopsin.
   
  
 0.467
LOC111575293
Rhodopsin.
   
  
 0.467
RHO
Rhodopsin.
   
  
 0.467
LOC111576828
Rhodopsin.
   
  
 0.467
clu
Clusterin; Belongs to the clusterin family.
   
  
 0.459
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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