Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xab2XPA binding protein 2. (850 aa)    
Predicted Functional Partners:
snw1
SNW domain containing 1.
   
 0.999
rbm22
RNA binding motif protein 22.
   
 0.999
aqr
Aquarius intron-binding spliceosomal factor.
   
 0.999
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
0.999
prpf19
Pre-mRNA processing factor 19.
   
 0.999
bud31
BUD31 homolog.
    
 0.998
LOC111571426
ISY1 splicing factor homolog.
    
 0.998
ZNF830
Zinc finger protein 830.
    
 0.995
LOC111578477
SYF2 pre-mRNA-splicing factor.
    
 0.993
plrg1
Pleiotropic regulator 1.
   
 0.991
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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