Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
rbp3Retinol binding protein 3. (617 aa)    
Predicted Functional Partners:
LOC111584730
Retinal G protein coupled receptor a.
      
 0.614
LOC111569204
Opticin.
   
  
 0.555
aplp2
Amyloid beta (A4) precursor-like protein 2.
      
 0.543
pde6g
Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.
   
  
 0.538
rbp1
Retinol binding protein 1, cellular, tandem duplicate 1; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
      
 0.507
otc
Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
      
 0.481
rd3
Retinal degeneration 3, GUCY2D regulator.
      
 0.476
LOC111576094
Lymphocyte antigen 6 family member pge.
      
 0.443
LOC111567724
Unc-119 lipid binding chaperone B homolog 2.
   
  
 0.429
LOC111575250
Rhodopsin.
   
  
 0.413
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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