STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cfap44Uncharacterized protein. (1826 aa)    
Predicted Functional Partners:
wdr19
WD repeat domain 19.
   
 0.663
mad2l1
MAD2 mitotic arrest deficient-like 1 (yeast).
   
 0.640
tex10
Testis expressed 10.
   
 0.627
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.624
LOC111586237
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.620
taf10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.617
taf2
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.613
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.611
erich3
Glutamate-rich 3.
   
  0.610
LOC111577651
Transcription initiation factor TFIID subunit.
   
 0.607
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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