STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111582593Talin 2a. (2542 aa)    
Predicted Functional Partners:
vcl
Vinculin b.
   
 0.984
LOC111581406
Vinculin a.
   
 0.984
LOC111585239
Calpain 2, (m/II) large subunit, like; Belongs to the peptidase C2 family.
    
 0.905
LOC111568891
Calpain 8; Belongs to the peptidase C2 family.
    
 0.905
LOC111568893
Calpain 2, (m/II) large subunit, like; Belongs to the peptidase C2 family.
    
 0.905
LOC111568895
Calpain 2, (m/II) large subunit b; Belongs to the peptidase C2 family.
    
 0.905
LOC111570353
Talin 1.
  
  
0.902
LOC111575450
Talin 2b.
  
  
 
0.900
itgb4
Integrin beta.
   
 0.863
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.862
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.