Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111582593Talin 2a. (2542 aa)    
Predicted Functional Partners:
vcl
Vinculin b.
   
 0.991
LOC111581406
Vinculin a.
   
 0.991
LOC111567785
Integrin beta; Belongs to the integrin beta chain family.
   
 0.923
LOC111563530
Integrin beta; Belongs to the integrin beta chain family.
   
 0.923
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.919
LOC111585239
Calpain 2, (m/II) large subunit, like; Belongs to the peptidase C2 family.
   
 0.911
ENSAOCP00000000653
Uncharacterized protein; Belongs to the peptidase C2 family.
   
 0.911
LOC111568891
Calpain 8; Belongs to the peptidase C2 family.
   
 0.911
LOC111568893
Calpain 2, (m/II) large subunit, like; Belongs to the peptidase C2 family.
   
 0.911
LOC111568895
Calpain 2, (m/II) large subunit b; Belongs to the peptidase C2 family.
   
 0.911
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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