Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ubtd1Ubiquitin domain containing 1b. (245 aa)    
Predicted Functional Partners:
LOC111581160
FERM and PDZ domain containing 2.
      
 0.617
mms19
MMS19 homolog, cytosolic iron-sulfur assembly component.
      
 0.612
LOC111577447
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.543
LOC111577446
TGF_BETA_2 domain-containing protein.
      
 0.543
usp48
Ubiquitin specific peptidase 48; Belongs to the peptidase C19 family.
      
 0.489
LOC111586491
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.
      
 0.480
psma2
Proteasome subunit alpha type.
      
 0.469
galt
Galactose-1-phosphate uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.
    
   0.465
psma1
Proteasome subunit alpha type.
      
 0.459
fbxw11
F-box and WD repeat domain containing 11a.
    
 
 0.449
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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