STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tcf25Transcription factor 25 (basic helix-loop-helix). (686 aa)    
Predicted Functional Partners:
NEMF
Nuclear export mediator factor.
   
 0.995
ltn1
Listerin E3 ubiquitin protein ligase 1.
   
 0.990
Ermn
Uncharacterized protein.
   
 0.934
rpl30
Ribosomal protein L30.
    
  0.924
rpl6
Ribosomal protein L6.
    
 0.911
rpl32
Ribosomal protein L32.
    
  0.907
RPL27A
Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.
   
  0.906
rpl10
Ribosomal protein L10.
    
  0.904
rpl35a
Ribosomal protein L35a.
    
  0.902
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
    
  0.901
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.