STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tcf25Transcription factor 25 (basic helix-loop-helix). (686 aa)    
Predicted Functional Partners:
ltn1
Listerin E3 ubiquitin protein ligase 1.
   
 
 0.831
NEMF
Nuclear export mediator factor.
    
 
 0.821
h6pd
Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).
   
  
 0.712
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.683
Ermn
Uncharacterized protein.
    
 
 0.679
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 
 0.652
ankzf1
Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1.
   
 
 0.652
LOC111577936
Zgc:136908; Belongs to the AAA ATPase family.
   
 
 0.652
znf598
Zinc finger protein 598.
      
 0.605
FANCA
FA complementation group A.
      
 0.587
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.