STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rabggtaRab geranylgeranyltransferase subunit alpha. (583 aa)    
Predicted Functional Partners:
chm
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
   
 0.993
RAB31
RAB31, member RAS oncogene family.
    
 0.938
rab22a
RAB22A, member RAS oncogene family.
    
 0.938
LOC111572279
AP-3 complex subunit mu-2.
      
 0.905
rab24
RAB24, member RAS oncogene family.
    
 0.870
RAB29
RAB29, member RAS oncogene family.
    
 0.841
rabl3
RAB, member of RAS oncogene family-like 3.
      
 0.819
LOC111564302
Uncharacterized protein.
    
 0.807
LOC111577180
ZRAB1B, member RAS oncogene family a.
    
 0.807
LOC111583301
Uncharacterized protein.
    
 0.807
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
Server load: medium (48%) [HD]