STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rabggtaRab geranylgeranyltransferase subunit alpha. (583 aa)    
Predicted Functional Partners:
chm
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
   
 0.988
RAB31
RAB31, member RAS oncogene family.
    
 0.802
rab22a
RAB22A, member RAS oncogene family.
    
 0.802
rab24
RAB24, member RAS oncogene family.
    
 0.795
LOC111563388
Si:dkey-34d22.5.
    
 0.770
ENSAOCP00000029076
RAB, member RAS oncogene family-like 6b.
    
 0.749
LOC111564302
Uncharacterized protein.
    
 0.695
LOC111577180
ZRAB1B, member RAS oncogene family a.
    
 0.695
LOC111583301
Uncharacterized protein.
    
 0.695
LOC111579642
Uncharacterized protein.
    
 0.684
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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