STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smarcd1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1. (515 aa)    
Predicted Functional Partners:
smarcc2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2.
    
 0.917
phf10
PHD finger protein 10.
    
 0.914
LOC111568432
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.
   
 0.901
smarce1
HMG box domain-containing protein.
   
 0.901
actl6a
Actin-like 6A; Belongs to the actin family.
   
 0.881
arid2
AT rich interactive domain 2 (ARID, RFX-like).
   
 
 0.864
smarcc1
Uncharacterized protein.
    
 0.861
LOC111573776
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b.
    
 0.861
LOC111577882
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
   
 0.856
SMARCB1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a.
   
 0.856
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.