STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
def8Differentially expressed in FDCP 8 homolog. (442 aa)    
Predicted Functional Partners:
uvrag
UV radiation resistance associated gene.
    
 
 0.635
mthfsd
Methenyltetrahydrofolate synthetase domain containing.
      
 0.594
pdcd5
Programmed cell death 5.
      
 0.571
LOC111586983
SAM domain, SH3 domain and nuclear localisation signals 1a.
   
  
 0.567
inpp5d
Inositol polyphosphate-5-phosphatase D.
   
  
 0.558
becn1
Beclin 1, autophagy related.
    
 
 0.529
LOC111583437
SH3 domain-containing protein.
      
 0.511
tcf25
Transcription factor 25 (basic helix-loop-helix).
      
 0.509
dbndd1
Si:ch1073-174d20.1.
      
 0.499
vps9d1
VPS9 domain containing 1.
      
 0.497
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.