STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
caprin1Cell cycle associated protein 1b. (683 aa)    
Predicted Functional Partners:
g3bp1
GTPase activating protein (SH3 domain) binding protein 1.
   
 
 0.735
g3bp2
Zgc:56304.
   
 
 0.729
LOC111582662
NTF2 domain-containing protein.
   
 
 0.729
usp10
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.627
fmr1
Fragile X mental retardation 1.
    
 
 0.611
nat10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
 
 
  
 0.535
nufip2
Nuclear FMR1 interacting protein 2.
    
 
 0.491
LOC111562527
Fragile X mental retardation, autosomal homolog 2.
    
 
 0.483
fxr1
Fragile X mental retardation, autosomal homolog 1.
    
 
 0.483
LOC111564164
Eukaryotic translation initiation factor 4, gamma 2b.
   
 
 0.450
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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