STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps35lVPS35 endosomal protein sorting factor like. (953 aa)    
Predicted Functional Partners:
ccdc22
Coiled-coil domain containing 22.
    
 
 0.919
commd1
Copper metabolism (Murr1) domain containing 1.
    
 
 0.897
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.897
commd6
COMM domain containing 6.
    
 
 0.870
ccdc93
Coiled-coil domain containing 93.
    
 
 0.848
commd2
COMM domain containing 2.
    
 
 0.848
commd3
COMM domain containing 3.
    
 
 0.838
LOC111587906
COMM domain containing 4.
    
 
 0.811
vps26c
VPS26 endosomal protein sorting factor C.
   
 
 0.792
dennd10
DENN domain containing 10.
    
 
 0.686
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.