Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ddx28DEAD (Asp-Glu-Ala-Asp) box polypeptide 28. (572 aa)    
Predicted Functional Partners:
fastkd2
FAST kinase domains 2.
   
 
 0.977
ngdn
Neuroguidin, EIF4E binding protein.
   
 0.971
mrm3
Mitochondrial rRNA methyltransferase 3a.
  
 
 0.965
utp3
UTP3 small subunit processome component.
   
  0.952
trub2
TruB pseudouridine (psi) synthase family member 2.
  
 
 0.942
mrpl4
Mitochondrial ribosomal protein L4.
   
 0.936
wdr46
WD repeat domain 46.
   
 0.930
malsu1
Si:zfos-1192g2.3.
   
 
 0.914
LOC111576462
Pentatricopeptide repeat domain 1.
   
 
 0.911
LOC111568129
RNA pseudouridine synthase D4.
  
 
 0.909
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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