Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111585197Arrestin domain containing 1a. (454 aa)    
Predicted Functional Partners:
vps37a
VPS37A subunit of ESCRT-I.
    
 
 0.866
LOC111567463
Potassium channel tetramerization domain containing 2.
    
   0.821
itch
E3 ubiquitin-protein ligase.
    
 
 0.815
LOC111584379
Zgc:123278.
   
 
 0.815
LOC111574438
E3 ubiquitin-protein ligase.
    
 
 0.815
tsg101
Tumor susceptibility 101a.
   
 
 0.815
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 
 0.753
LOC111572524
E3 ubiquitin-protein ligase.
    
 
 0.753
nedd4
NEDD4 E3 ubiquitin protein ligase a.
    
 
 0.688
nedd4l
NEDD4 like E3 ubiquitin protein ligase.
    
 
 0.688
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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