Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111573638Tetraspanin. (315 aa)    
Predicted Functional Partners:
LOC111578656
Tetraspanin.
  
  
 
0.901
prdm11
PR domain containing 11.
     
 0.619
tpmt
Thiopurine S-methyltransferase, tandem duplicate 1.
      
 0.508
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
    
 
 0.483
amfr
Autocrine motility factor receptor b.
    
 
 0.483
vta1
Vesicle (multivesicular body) trafficking 1.
      
 0.476
LOC111584379
Zgc:123278.
    
 
 0.470
tsg101
Tumor susceptibility 101a.
    
 
 0.470
CD9
Tetraspanin.
    
 
 0.445
LOC111571949
Tetraspanin.
    
 
 0.445
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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