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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mthfsdMethenyltetrahydrofolate synthetase domain containing. (473 aa)    
Predicted Functional Partners:
nop56
Uncharacterized protein.
   
    0.831
LOC111580751
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like.
    
 0.806
LOC111576630
Uncharacterized protein.
    
 0.806
snu13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
    0.796
smim12
Small integral membrane protein 12.
   
    0.796
utp15
UTP15 small subunit processome component.
   
    0.790
LOC111563307
Zgc:153901.
    
 0.775
ftcd
Formimidoyltransferase cyclodeaminase.
    
 0.775
wdr6
WD repeat domain 6.
   
    0.775
rpp38
Ribonuclease P/MRP 38 subunit.
   
    0.755
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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