LOC111575497 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111575497

La ribonucleoprotein domain family, member 6b. (394 aa)

Predicted Functional Partners:

LOC111585014

0.869

ENSAOCP00000012646

0.869

ENSAOCP00000016650

0.869

LOC111574951

0.869

ENSAOCP00000021205

0.869

ENSAOCP00000021220

0.869

itsn1

0.706

strap

0.631

nhp2

0.505

gpr171

0.431

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAOCP00000012646	ENSAOCP00000016650	ENSAOCP00000012646	ENSAOCP00000016650	Uncharacterized protein.	EH domain-containing protein.	0.844
ENSAOCP00000012646	ENSAOCP00000021205	ENSAOCP00000012646	ENSAOCP00000021205	Uncharacterized protein.	Uncharacterized protein.	0.844
ENSAOCP00000012646	ENSAOCP00000021220	ENSAOCP00000012646	ENSAOCP00000021220	Uncharacterized protein.	DH domain-containing protein.	0.844
ENSAOCP00000012646	LOC111574951	ENSAOCP00000012646	ENSAOCP00000019383	Uncharacterized protein.	Uncharacterized protein.	0.844
ENSAOCP00000012646	LOC111575497	ENSAOCP00000012646	ENSAOCP00000001608	Uncharacterized protein.	La ribonucleoprotein domain family, member 6b.	0.869
ENSAOCP00000012646	LOC111585014	ENSAOCP00000012646	ENSAOCP00000005197	Uncharacterized protein.	Intersectin 2b.	0.844
ENSAOCP00000012646	itsn1	ENSAOCP00000012646	ENSAOCP00000007504	Uncharacterized protein.	Intersectin 1 (SH3 domain protein).	0.669
ENSAOCP00000016650	ENSAOCP00000012646	ENSAOCP00000016650	ENSAOCP00000012646	EH domain-containing protein.	Uncharacterized protein.	0.844
ENSAOCP00000016650	ENSAOCP00000021205	ENSAOCP00000016650	ENSAOCP00000021205	EH domain-containing protein.	Uncharacterized protein.	0.844
ENSAOCP00000016650	ENSAOCP00000021220	ENSAOCP00000016650	ENSAOCP00000021220	EH domain-containing protein.	DH domain-containing protein.	0.844
ENSAOCP00000016650	LOC111574951	ENSAOCP00000016650	ENSAOCP00000019383	EH domain-containing protein.	Uncharacterized protein.	0.844
ENSAOCP00000016650	LOC111575497	ENSAOCP00000016650	ENSAOCP00000001608	EH domain-containing protein.	La ribonucleoprotein domain family, member 6b.	0.869
ENSAOCP00000016650	LOC111585014	ENSAOCP00000016650	ENSAOCP00000005197	EH domain-containing protein.	Intersectin 2b.	0.844
ENSAOCP00000016650	itsn1	ENSAOCP00000016650	ENSAOCP00000007504	EH domain-containing protein.	Intersectin 1 (SH3 domain protein).	0.669
ENSAOCP00000021205	ENSAOCP00000012646	ENSAOCP00000021205	ENSAOCP00000012646	Uncharacterized protein.	Uncharacterized protein.	0.844
ENSAOCP00000021205	ENSAOCP00000016650	ENSAOCP00000021205	ENSAOCP00000016650	Uncharacterized protein.	EH domain-containing protein.	0.844
ENSAOCP00000021205	ENSAOCP00000021220	ENSAOCP00000021205	ENSAOCP00000021220	Uncharacterized protein.	DH domain-containing protein.	0.844
ENSAOCP00000021205	LOC111574951	ENSAOCP00000021205	ENSAOCP00000019383	Uncharacterized protein.	Uncharacterized protein.	0.844
ENSAOCP00000021205	LOC111575497	ENSAOCP00000021205	ENSAOCP00000001608	Uncharacterized protein.	La ribonucleoprotein domain family, member 6b.	0.869
ENSAOCP00000021205	LOC111585014	ENSAOCP00000021205	ENSAOCP00000005197	Uncharacterized protein.	Intersectin 2b.	0.844