Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tspan8Tetraspanin. (227 aa)    
Predicted Functional Partners:
ptprc
Protein tyrosine phosphatase receptor type C.
     
 0.698
spata18
Spermatogenesis associated 18.
      
 0.602
ZFC3H1
Zinc finger C3H1-type containing.
      
 0.600
ENSAOCP00000030690
Usher syndrome 1C.
   
 0.565
spata20
Spermatogenesis associated 20.
      
 0.551
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.543
hdgfl2
HDGF like 2.
      
 0.484
cdkal1
CDK5 regulatory subunit associated protein 1-like 1.
      
 0.474
LOC111566783
Upper zone of growth plate and cartilage matrix associated b.
      
 0.466
LOC111586745
Shisa family member 7a.
      
 0.426
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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