STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111577802HMG box domain-containing protein. (774 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.722
trip12
Thyroid hormone receptor interactor 12.
    
 
 0.609
LOC111582920
Uncharacterized protein.
   
 0.572
LOC111566303
Junction plakoglobin a.
   
 0.572
LOC111573771
Uncharacterized protein.
   
 0.572
LOC111587448
SRY-box transcription factor 5.
  
 
 
0.571
LOC111586389
SRY-box transcription factor 5.
  
 
 
0.565
LOC111578884
Doublesex and mab-3 related transcription factor 1.
    
 
 0.516
LOC111573967
GATA binding protein 1a.
    
 
 0.462
hspa5
Heat shock protein 5; Belongs to the heat shock protein 70 family.
   
  
 0.432
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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