shtn1 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

shtn1

Shootin 1. (506 aa)

Predicted Functional Partners:

LOC111586101

0.590

mysm1

0.421

slc2a6

0.411

abca3

0.410

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111586101	shtn1	ENSAOCP00000002824	ENSAOCP00000001661	Doublecortin domain containing 2B.	Shootin 1.	0.590
abca3	shtn1	ENSAOCP00000024081	ENSAOCP00000001661	ATP-binding cassette, sub-family A (ABC1), member 3b.	Shootin 1.	0.410
mysm1	shtn1	ENSAOCP00000015005	ENSAOCP00000001661	Myb-like, SWIRM and MPN domains 1.	Shootin 1.	0.421
shtn1	LOC111586101	ENSAOCP00000001661	ENSAOCP00000002824	Shootin 1.	Doublecortin domain containing 2B.	0.590
shtn1	abca3	ENSAOCP00000001661	ENSAOCP00000024081	Shootin 1.	ATP-binding cassette, sub-family A (ABC1), member 3b.	0.410
shtn1	mysm1	ENSAOCP00000001661	ENSAOCP00000015005	Shootin 1.	Myb-like, SWIRM and MPN domains 1.	0.421
shtn1	slc2a6	ENSAOCP00000001661	ENSAOCP00000012219	Shootin 1.	Solute carrier family 2 member 6; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.411
slc2a6	shtn1	ENSAOCP00000012219	ENSAOCP00000001661	Solute carrier family 2 member 6; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Shootin 1.	0.411