LOC111584576 protein (Amphiprion ocellaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111584576

Proteasome subunit beta 12. (217 aa)

Predicted Functional Partners:

psma2

0.995

psmb4

0.995

LOC111580250

0.995

psma3

0.995

psma5

0.995

psmb3

0.995

psma1

0.994

psmb1

0.994

psmc1

0.982

LOC111564418

0.980

Your Current Organism:

Amphiprion ocellaris

NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111564418	LOC111580250	ENSAOCP00000020061	ENSAOCP00000018706	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.993
LOC111564418	LOC111584576	ENSAOCP00000020061	ENSAOCP00000001673	Proteasome subunit alpha type.	Proteasome subunit beta 12.	0.980
LOC111564418	psma1	ENSAOCP00000020061	ENSAOCP00000012752	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.995
LOC111564418	psma2	ENSAOCP00000020061	ENSAOCP00000006142	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.996
LOC111564418	psma3	ENSAOCP00000020061	ENSAOCP00000020582	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.996
LOC111564418	psma5	ENSAOCP00000020061	ENSAOCP00000025571	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.995
LOC111564418	psmb1	ENSAOCP00000020061	ENSAOCP00000029724	Proteasome subunit alpha type.	Proteasome subunit beta.	0.996
LOC111564418	psmb3	ENSAOCP00000020061	ENSAOCP00000029379	Proteasome subunit alpha type.	Proteasome subunit beta.	0.997
LOC111564418	psmb4	ENSAOCP00000020061	ENSAOCP00000015256	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.995
LOC111564418	psmc1	ENSAOCP00000020061	ENSAOCP00000021060	Proteasome subunit alpha type.	Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.	0.988
LOC111580250	LOC111564418	ENSAOCP00000018706	ENSAOCP00000020061	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.993
LOC111580250	LOC111584576	ENSAOCP00000018706	ENSAOCP00000001673	Proteasome subunit alpha type.	Proteasome subunit beta 12.	0.995
LOC111580250	psma1	ENSAOCP00000018706	ENSAOCP00000012752	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
LOC111580250	psma2	ENSAOCP00000018706	ENSAOCP00000006142	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
LOC111580250	psma3	ENSAOCP00000018706	ENSAOCP00000020582	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
LOC111580250	psma5	ENSAOCP00000018706	ENSAOCP00000025571	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
LOC111580250	psmb1	ENSAOCP00000018706	ENSAOCP00000029724	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
LOC111580250	psmb3	ENSAOCP00000018706	ENSAOCP00000029379	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
LOC111580250	psmb4	ENSAOCP00000018706	ENSAOCP00000015256	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
LOC111580250	psmc1	ENSAOCP00000018706	ENSAOCP00000021060	Proteasome subunit alpha type.	Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.	0.999