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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prrx1Paired related homeobox 1a. (245 aa)    
Predicted Functional Partners:
znf366
Zinc finger protein 366.
    
 
 0.592
hhex
Homeobox domain-containing protein.
      
 0.592
ENSAOCP00000029061
UBX domain protein 11.
      
 0.559
rtf2
Replication termination factor 2.
      
 0.507
LOC111565540
Lysyl oxidase-like 5b.
   
 
 0.468
cdc6
Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family.
   
  
 0.458
LOC111581582
Vitamin K epoxide reductase complex, subunit 1.
      
 0.449
foxn4
Forkhead box N4.
   
 0.441
LOC111587592
Zinc finger protein 710b.
    
 
 0.437
LOC111582093
Zinc finger protein 710a.
    
 
 0.437
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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