Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prrx1Paired related homeobox 1a. (245 aa)    
Predicted Functional Partners:
col6a1
Collagen, type VI, alpha 1.
   
  
 0.758
ENSAOCP00000029061
UBX domain protein 11.
      
 0.705
atoh8
BHLH domain-containing protein.
      
 0.705
LOC111581582
Vitamin K epoxide reductase complex, subunit 1.
      
 0.686
rtf2
Replication termination factor 2.
      
 0.655
LOC111571306
Collagen, type VI, alpha 2.
   
  
 0.640
ENSAOCP00000009972
Uncharacterized protein.
   
  
 0.640
LOC111563675
Periostin, osteoblast specific factor b.
   
  
 0.634
postn
Periostin, osteoblast specific factor a.
   
  
 0.634
ENSAOCP00000009829
Uncharacterized protein.
    
 
 0.624
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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