Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC111580080Collagen, type XII, alpha 1b. (3326 aa)    
Predicted Functional Partners:
GUCY1A2
Guanylate cyclase 1 soluble subunit alpha 2; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
      
 0.502
LOC111583698
Microtubule-associated protein 1Aa.
      
 0.458
LOC111570081
Microtubule-associated protein 1Ab.
      
 0.458
col6a1
Collagen, type VI, alpha 1.
   
 0.417
slc25a46
Solute carrier family 25 member 46; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.401
LOC111584135
Cytochrome c oxidase subunit 7A1.
      
 0.401
prpf4
PRP4 pre-mRNA processing factor 4 homolog (yeast).
      
 0.401
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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