STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111563154Myocardin related transcription factor Ab. (1249 aa)    
Predicted Functional Partners:
srf
MADS-box domain-containing protein.
    
 0.785
LOC111583664
MADS-box domain-containing protein.
    
 0.747
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.565
LOC111572496
Mitogen-activated protein kinase kinase 4b; Belongs to the protein kinase superfamily.
   
 0.558
LOC111574864
Mitogen-activated protein kinase kinase 4; Belongs to the protein kinase superfamily.
   
 0.558
nbr1
NBR1 autophagy cargo receptor a.
    
 0.537
pgp
Phosphoglycolate phosphatase; Belongs to the HAD-like hydrolase superfamily.
      
 0.511
LOC111572311
Mitogen-activated protein kinase kinase 2b.
   
 0.493
map2k1
Mitogen-activated protein kinase kinase 1; Belongs to the protein kinase superfamily.
   
 0.493
map2k2
Mitogen-activated protein kinase kinase 2a; Belongs to the protein kinase superfamily.
   
 0.493
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.