Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111563154Myocardin related transcription factor Ab. (1249 aa)    
Predicted Functional Partners:
srf
MADS-box domain-containing protein.
    
 0.893
LOC111583664
MADS-box domain-containing protein.
    
 0.851
pgp
Phosphoglycolate phosphatase; Belongs to the HAD-like hydrolase superfamily.
      
 0.615
mtpap
Mitochondrial poly(A) polymerase.
      
 0.588
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.579
hmbs
Hydroxymethylbilane synthase a.
     
 0.563
LOC111585137
Uncharacterized protein.
    
 0.560
LOC111587057
Actin alpha 1, skeletal muscle.
    
 0.560
LOC111579826
Uncharacterized protein.
    
 0.560
ACTA1
Actin alpha 1, skeletal muscle.
    
 0.560
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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