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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111575484Im:7138239. (296 aa)    
Predicted Functional Partners:
nfyb
Nuclear transcription factor Y, beta a.
   
 0.949
nfya
Nuclear transcription factor Y, alpha, like.
    
 0.948
pole3
Polymerase (DNA directed), epsilon 3 (p17 subunit).
    
 0.936
LOC111575499
Anti-dorsalizing morphogenic protein.
  
   
 0.560
pole2
DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.
     
 0.478
gata3
GATA binding protein 3.
   
 
 0.461
LOC111588783
GATA binding protein 2a.
   
 
 0.461
gata6
GATA binding protein 6.
   
 
 0.461
GATA2
GATA binding protein 2.
   
 
 0.461
trps1
Trichorhinophalangeal syndrome I.
   
 
 0.461
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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