Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arid4aAT rich interactive domain 4A (RBP1-like). (1074 aa)    
Predicted Functional Partners:
sap30l
Sap30-like.
    
 0.961
suds3
SDS3 homolog, SIN3A corepressor complex component.
   
 0.960
actl6a
Actin-like 6A; Belongs to the actin family.
   
 0.953
sap130
Sin3A-associated protein a.
    
 0.941
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
 0.933
wdr73
WD repeat domain 73.
   
 0.933
LOC111577897
WD_REPEATS_REGION domain-containing protein.
   
 0.933
LOC111572897
WD_REPEATS_REGION domain-containing protein.
   
 0.933
phf12
PHD finger protein 12b.
    
 
 0.920
HDAC3
Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
   
 0.914
Your Current Organism:
Amphiprion ocellaris
NCBI taxonomy Id: 80972
Other names: A. ocellaris, clown anemonefish
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